Adaptive heterogeneous parallelism for semi-empirical lattice dynamics in computational materials science.

With the variability in performance of the multitude of parallel environments available today, the conceptual overhead created by the need to anticipate runtime information to make design-time decisions has become overwhelming. Performance-critical applications and libraries carry implicit assumptions based on incidental metrics that are not portable to emerging computational platforms or even alternative contemporary architectures. Furthermore, the significance of runtime concerns such as makespan, energy efficiency and fault tolerance depends on the situational context. This thesis presents a case study in the application of both Mattsons prescriptive pattern-oriented approach and the more principled structured parallelism formalism to the computational simulation of inelastic neutron scattering spectra on hybrid CPU/GPU platforms. The original ad hoc implementation as well as new patternbased and structured implementations are evaluated for relative performance and scalability. Two new structural abstractions are introduced to facilitate adaptation by lazy optimisation and runtime feedback. A deferred-choice abstraction represents a unified space of alternative structural program variants, allowing static adaptation through model-specific exhaustive calibration with regards to the extrafunctional concerns of runtime, average instantaneous power and total energy usage. Instrumented queues serve as mechanism for structural composition and provide a representation of extrafunctional state that allows realisation of a market-based decentralised coordination heuristic for competitive resource allocation and the Lyapunov drift algorithm for cooperative scheduling

Towards Ad-Hoc GPU Acceleration Of Parallel Eigensystem Computations

This paper explores the early implementation of high- performance routines for the solution of multiple large Hermitian eigenvector and eigenvalue systems on a Graphics Processing Unit (GPU). We report a perfor- mance increase of up to two orders of magnitude over the original EISPACK routines with a NVIDIA Tesla C2050 GPU, potentially allowing an order of magnitude in- crease in the complexity or resolution of a neutron scat- tering modeling application

Detection of Multidrug-Resistant Acinetobacter baumannii among Gram-Negative Bacteria Isolated from Clinical Samples

Acinetobacter baumannii is an aerobic, Gram -negative cocco-bacilli, non-fermentative, non-motile, and non-fastidious organism belonging to the genus Acinetobacter. The A. baumannii has emerged as a worldwide nosocomial pathogen causing about 80%25 of nosocomial infections comprising ventilator-acquired pneumonia, bacteremia, meningitis, urinary tract infections, skin and soft tissues infections associated with high mortality rate of approximately 63.3%25. Although literature shows sufficient information about the drug resistant A. baumannii, there has been inadequate reports on the antibiotic resistance level of this bacterium in the study area. The aim of this research was to detect Multidrug-resistant A. baumannii isolates among Gram-negative bacteria isolated from Federal Teaching Hospital, Gombe, Nigeria. A total of 1008 clinical samples were collected and cultured on MacConkey agar and Blood agar plates at 37o C for 18-24 hours. Following the incubation period, discrete colonies obtained were subjected to Gram staining. The Gram-negative isolates were identified based on conventional biochemical tests with further use of VITEK 2 COMPACT (BioMérieux, France) for confirmation of A. baumannii amongst the Gram-negative organisms. The results obtained showed that 263 Gram-negative organisms were isolated. A. baumannii accounted for 8.5%25 prevalence. Most of the A. baumannii isolated were from the male patients (75%25) within the age range of 33-48 years. Antibiotic susceptibility test using Kirby Bauer method in accordance with CLSI guidelines was done on 20 A. baumannii isolates. The isolates were more sensitive to levofloxacin (60%25), followed by Gentamicin (55%25), then Ciprofloxacin and Tetracycline (50%25) respectively. High level of resistance to Ceftriaxone (80%25), Cefepime (75%25), Ceftazidime (65%25), Piperacillin-Tazobactam (55%25), Ampicillin%252FSulbactam (60%25), Tigecycline (60%25), Meropenem (55%25) and Amikacin (60%25). This study revealed that 15 (75%25) of the A. baumannii were found to be multidrug-resistant. Therefore, antibiotic stewardship is necessary to combat further dissemination of this organism

Issues and Challenges Involved In Green Building Concept Innovations Adoption In Construction Practice

Green concept is globally creating impact with diverse application at various facet of human endeavour. The concept involved the practice whereby energy is utilized in a way that it would not jeopardise continuity of energy usage in the environment. The aim of this study is to explore the issues and challenges that surround the adoption of green concept in Nigeria focusing on built environment with a view to enhancing the rate of adoption of the concept for an increased healthy environment. The study adopted convenience sampling method to pick the population for the study, which comprised of picking construction companies that engaged on a project that involved green building features. Population frame of 250 professionals that are registered with professional bodies that cut across 20 selected construction firms was used for the study. A structured questionnaire designed in Likert scale of 1 to 5 was distributed among 50 respondents for data collation. The data was later processed using content analysis, descriptive statistics and relative agreement index. Data was collated on parameters that include evaluation of existing issues and challenges involved in green building concept innovations adoption in construction practice, current green concept practice in construction, challenges involved in adoption of green concept in construction, critical issues involved in green concept adoption, drivers for success in the adoption of green concepts in construction, challenges involved in adoption of green concept in construction. Innovative illustrations of integration of green concepts in buildings. Mean Item Score was used with relative agreement index, this was used to rate the perception of respondents on parameters calibrated for respondents to answer. Categorical regression analysis was used to carry out comparative analysis of respondents’ submission on success factors that influences the adoption of green building concept and challenges involved in the adoption of green building. Some other parameters were further explored, they include, innovative approach to sustainable construction practice and perspectives to green building practice. The analysis of the study brought to fore factors to be taken into consideration for effective adoption of green building concept. The challenges such as thought reengineering and philosophical and cultural adjustment need to be further harnessed for people to leave the built environment better than it was me

Statistical modelling and optimization of alkaline peroxide oxidation pretreatment process on rice husk cellulosic biomass to enhance enzymatic convertibility and fermentation to ethanol

The complex and ordered arrangements of the lignocellulosic materials make them recalcitrant for their conversions to ethanol. Pretreatment is a crucial step in overcoming these hindrances. In this study, a 23 -full factorial design of experiments optimization technique was applied on the alkaline peroxide oxidation pretreatments of rice husks biomass. The low–high levels of the influencing variables on pretreatments were; temperature (100–120 C), time (1–2 h), % (v/v)H2O2 concentration (1–3%). Under the prevailing pretreatments, the optimum conditions were predicted and validated to be 109 C, 2 h, and 1.38% H2O2 which yielded 56% (w/w) cellulose content, 55% (w/w) hemicellulose solubilization, and 48% (w/w) lignin removal. At the established optimum pretreatment conditions, and considering variations in biomass and enzymes loadings, maximum reducing sugars production was 205 mg/g dry biomass at different enzymatic hydrolysis conditions of 3% biomass loading, hydrolysis temperature of 45 C, hydrolysis time of 24 h, and 35 FPU/g cellulose enzyme loading. The highest cellulose conversion of 33% yielded 24 g/L ethanol at the end of the first day of saccharification and fermentation. Physical, structural, and morphological investigations on raw and treated materials using tools such as stereomicroscopy, scanning electron microscopy, and fourier transform infrared spectroscopy further revealed the effectiveness of chosen method on rice husks biomas

Quantification of Lipoteichoic Acid in Hemodialysis Patients With Central Venous Catheters

Hemodialysis patients with central venous catheters (CVCs) have chronic systemic inflammation, the source of which may be related to intraluminal bacterial biofilm. There is currently no non-invasive method to adequately evaluate intraluminal biofilm. Lipoteichoic acid (LTA) is a Gram-positive bacterial cell wall component that is spontaneously shed. The purpose of this study was to determine whether LTA could be quantified in biological samples and to evaluate potential relationships to markers of inflammation. Heparin-locked catheter aspirate was drawn from both the arterial and venous ports of each CVC prior to dialysis initiation. Venous blood from the dialysis circuit was collected 30 min after dialysis initiation. LTA was quantified in aspirate and plasma. Key markers of inflammation (interleukin-6, and hepcidin) and endothelial dysfunction (soluble vascular endothelial cadherin) were also determined in plasma samples. Catheter aspirate and systemic blood samples were obtained from 40 hemodialysis patients. The median (range) duration of catheter use was 130 (20–1635) days. Unexpectedly, median (range) plasma LTA concentrations (ng/mL) were significantly higher than catheter aspirate LTA concentrations [3.93 (0.25–15) vs. 2.38 (0.1–8.1), respectively, p = 0.01] in the majority (70%) of patients. Area under the receiver operator characteristic (ROC) curve showed good potential prognostic value of catheter aspirate LTA predicting systemic LTA concentrations with an area under the curve of 0.815 (95% CI, 0.68–0.95). A significant correlation was found between LTA and serum ferritin (r = 0.32, p = 0.04), however, there were no significant correlations between LTA and the other inflammation biomarkers assessed. LTA is quantifiable in aspirate and plasma of hemodialysis patients with CVCs and warrants further investigation to determine potential clinical application to intraluminal biofilm evaluation

Estimation of changes in the force of infection for intestinal and urogenital schistosomiasis in countries with Schistosomiasis Control Initiative-assisted programmes

The last decade has seen an expansion of national schistosomiasis control programmes in Africa based on large-scale preventative chemotherapy. In many areas this has resulted in considerable reductions in infection and morbidity levels in treated individuals. In this paper, we quantify changes in the force of infection (FOI), defined here as the per (human) host parasite establishment rate, to ascertain the impact on transmission of some of these programmes under the umbrella of the Schistosomiasis Control Initiative (SCI)

Observed Reductions in Schistosoma mansoni Transmission from Large-Scale Administration of Praziquantel in Uganda: A Mathematical Modelling Study

To date schistosomiasis control programmes based on chemotherapy have largely aimed at controlling morbidity in treated individuals rather than at suppressing transmission. In this study, a mathematical modelling approach was used to estimate reductions in the rate of Schistosoma mansoni reinfection following annual mass drug administration (MDA) with praziquantel in Uganda over four years (2003-2006). In doing this we aim to elucidate the benefits of MDA in reducing community transmission.Age-structured models were fitted to a longitudinal cohort followed up across successive rounds of annual treatment for four years (Baseline: 2003, TREATMENT: 2004-2006; n = 1,764). Instead of modelling contamination, infection and immunity processes separately, these functions were combined in order to estimate a composite force of infection (FOI), i.e., the rate of parasite acquisition by hosts.MDA achieved substantial and statistically significant reductions in the FOI following one round of treatment in areas of low baseline infection intensity, and following two rounds in areas with high and medium intensities. In all areas, the FOI remained suppressed following a third round of treatment.This study represents one of the first attempts to monitor reductions in the FOI within a large-scale MDA schistosomiasis morbidity control programme in sub-Saharan Africa. The results indicate that the Schistosomiasis Control Initiative, as a model for other MDA programmes, is likely exerting a significant ancillary impact on reducing transmission within the community, and may provide health benefits to those who do not receive treatment. The results obtained will have implications for evaluating the cost-effectiveness of schistosomiasis control programmes and the design of monitoring and evaluation approaches in general

The range and level of impurities in CO2 streams from different carbon capture sources

For CO2 capture and storage deployment, the impact of impurities in the gas or dense phase CO2 stream arising from fossil fuel power plants, or large scale industrial emitters, is of fundamental importance to the safe and economic transportation and storage of the captured CO2. This paper reviews the range and level of impurities expected from the main capture technologies used with fossil-fuelled power plants in addition to other CO2 emission-intensive industries. Analysis is presented with respect to the range of impurities present in CO2 streams captured using pre-combustion, post-combustion and oxy-fuel technologies, in addition to an assessment of the different parameters affecting the CO2 mixture composition. This includes modes of operation of the power plant, and different technologies for the reduction and removal of problematic components such as water and acid gases (SOx/NOx). A literature review of data demonstrates that the purity of CO2 product gases from carbon capture sources is highly dependent upon the type of technology used. This paper also addresses the CO2 purification technologies available for the removal of CO2 impurities from raw oxy-fuel flue gas, such as Hg and non-condensable compounds. CO2 purities of over 99% are achievable using post-combustion capture technologies with low levels of the main impurities of N2, Ar and O2. However, CO2 capture from oxy-fuel combustion and integrated gasification combined cycle power plants will need to take into consideration the removal of non-condensables, acid gas species, and other contaminants. The actual level of CO2 purity required will be dictated by a combination of transport and storage requirements, and process economics

Antimicrobial resistance among migrants in Europe: a systematic review and meta-analysis

BACKGROUND: Rates of antimicrobial resistance (AMR) are rising globally and there is concern that increased migration is contributing to the burden of antibiotic resistance in Europe. However, the effect of migration on the burden of AMR in Europe has not yet been comprehensively examined. Therefore, we did a systematic review and meta-analysis to identify and synthesise data for AMR carriage or infection in migrants to Europe to examine differences in patterns of AMR across migrant groups and in different settings. METHODS: For this systematic review and meta-analysis, we searched MEDLINE, Embase, PubMed, and Scopus with no language restrictions from Jan 1, 2000, to Jan 18, 2017, for primary data from observational studies reporting antibacterial resistance in common bacterial pathogens among migrants to 21 European Union-15 and European Economic Area countries. To be eligible for inclusion, studies had to report data on carriage or infection with laboratory-confirmed antibiotic-resistant organisms in migrant populations. We extracted data from eligible studies and assessed quality using piloted, standardised forms. We did not examine drug resistance in tuberculosis and excluded articles solely reporting on this parameter. We also excluded articles in which migrant status was determined by ethnicity, country of birth of participants' parents, or was not defined, and articles in which data were not disaggregated by migrant status. Outcomes were carriage of or infection with antibiotic-resistant organisms. We used random-effects models to calculate the pooled prevalence of each outcome. The study protocol is registered with PROSPERO, number CRD42016043681. FINDINGS: We identified 2274 articles, of which 23 observational studies reporting on antibiotic resistance in 2319 migrants were included. The pooled prevalence of any AMR carriage or AMR infection in migrants was 25·4% (95% CI 19·1-31·8; I2 =98%), including meticillin-resistant Staphylococcus aureus (7·8%, 4·8-10·7; I2 =92%) and antibiotic-resistant Gram-negative bacteria (27·2%, 17·6-36·8; I2 =94%). The pooled prevalence of any AMR carriage or infection was higher in refugees and asylum seekers (33·0%, 18·3-47·6; I2 =98%) than in other migrant groups (6·6%, 1·8-11·3; I2 =92%). The pooled prevalence of antibiotic-resistant organisms was slightly higher in high-migrant community settings (33·1%, 11·1-55·1; I2 =96%) than in migrants in hospitals (24·3%, 16·1-32·6; I2 =98%). We did not find evidence of high rates of transmission of AMR from migrant to host populations. INTERPRETATION: Migrants are exposed to conditions favouring the emergence of drug resistance during transit and in host countries in Europe. Increased antibiotic resistance among refugees and asylum seekers and in high-migrant community settings (such as refugee camps and detention facilities) highlights the need for improved living conditions, access to health care, and initiatives to facilitate detection of and appropriate high-quality treatment for antibiotic-resistant infections during transit and in host countries. Protocols for the prevention and control of infection and for antibiotic surveillance need to be integrated in all aspects of health care, which should be accessible for all migrant groups, and should target determinants of AMR before, during, and after migration. FUNDING: UK National Institute for Health Research Imperial Biomedical Research Centre, Imperial College Healthcare Charity, the Wellcome Trust, and UK National Institute for Health Research Health Protection Research Unit in Healthcare-associated Infections and Antimictobial Resistance at Imperial College London